The regulation of salt and drought stress responses by SDR and its interacting proteins in arabidopsis

The ubiquitin/26S proteasome pathway is key to protein degradation in plants. Its specificity often orchestrated by ubiquitin-protein ligases (or E3s), which facilitate the translocation of ubiquitin to appropriate targets. F-box protein is one of the subunit of E3 ligases SCF (Skp1-Cullin/CDC53-F-box). It has been reported that F-box protein is not only related to plant growth but also abiotic stress. In this study, the protein was found localised in the nucleus and its function was identified. It demonstrated that on salt treatment SDR is involved in salt and drought stress response in Arabidopsis. However, the function of most F-box proteins is unknown. In this paper, the full length of the F-box protein SDR gene was cloned by traditional reverse molecular biology methods, and related transgenic materials were constructed. Bioinformatics analysis of the cis-element of the promoter of F-box protein was used to screen F-box proteins that may be stressed by plants. We found a large number of abiotic stress response elements such as drought stress response elements, salt stress response elements, and heat shock response elements in the promoter sequence upstream of the SDR (At5g15710) gene. The results show that SDR can be induced by ABA, heat shock, and salt, but expression is suppressed under drought treatment

Flowering problems and their possible solution in cassava breeding

Six elite cassava clones were chosen from cassava breeding program at the National Crops Resource Research Institute (NaCRRI) based on their flowering characteristics and seed set. The clones were planted in randomized complete block experimental design with 3 replications. The floral biology of these cassava clones were studied, focusing on morphological traits and developmental timing. Since cassava develops branches in levels, data was sourced from the 1st level of branching through the 4th level of branching. The result indicated that days to branching generally varied among all the genotypes studied, indicating the need to use different planting dates for different genotypes to ensure synchronization of flowering. The time difference among genotypes from branching to visible inflorescence was not larger than one and a half days and this difference did not seem to be a factor for synchronization. The general number of female flowers was low in all genotypes across branching levels. This suggests there is a need to apply techniques that could enhance flowering in cassava. Conversely, the number of male flowers outnumbered the female flowers, suggesting that male flower production may not be a limiting factor to hybrid seed production. The male flower opened 20 to 30 days later after the opening of the female flowers. This calls for delayed planting of the early flowering genotypes when used as female parent. It was recommended that in order to synchronize flowering, the late flowering genotypes have to be planted ahead of the early flowering genotypes. In addition, applying techniques such as growth regulators, red light and finding the most optimal locations for flowering is recommended for further study as a way of enhancing flowering among cassava genotypes

Comparison of Near-infrared Spectroscopy with other options for total carotenoids content phenotyping in fresh cassava roots

This study compared the relationship of different phenotyping methods including iCheckTM CAROTENE (iCheck), Chromameter, colour chart and visible/near-infrared spectroscopy (Vis/NIRS) used in quantifying total carotenoids content (TCC) in fresh cassava roots. Using a total of 194 cassava clones harvested from the International Institute of Tropical Agriculture (IITA), Ibadan, we compared the repeatability precision, accuracy of measurement and correlations of these phenotyping methods. From the results, Vis/NIRS-analyzed TCC had high and positive correlations with Chromameter and Color chart (r = 0.91 and 0.71, respectively). On the other hand, the result revealed somewhat moderate correlation (r = 0.67) between Vis/NIRS and iCheck measurements. Vis/NIRS, iCheck and chromameter methods gave high and nearly equal heritability estimates (0.95, 0.98 and 0.98, respectively) illustrating high repeatability precision of these methods; an indication that they can be used for germplasm selection in the early stages of breeding. Conversely, with Bland-Altman plot at 95% confidence level, the accuracy of iCheck was not comparable with that of Vis/ NIRS. The information derived from this analysis directly contributes towards the genetic improvement of root quality traits in cassava and facilitates the sharing of data across cassava breeding consortium

Portable Spectroscopy Calibration with Inexpensive and Simple Sampling Reference Alternatives for Dry Matter and Total Carotenoid Contents in Cassava Roots

The use of standard laboratory methods for trait evaluation is expensive and challenging, especially for low-resource breeding programs. For carotenoid assessment, rather than the standard HPLC method, these programs mostly rely on proxy approaches for quantitative total carotenoid content (TCC) assessment. To ensure data transferability and consistency, calibration models were developed using TCC iCheck and Chroma Meter proxy methods for the adoption of the alternative near-infrared phenotyping method in cassava. Calibration was developed for dry matter content (DMC) using a simple and inexpensive sampling procedure associated with the proxy TCC protocols. The partial least square (PLS) and random forest (RF) models were compared for the two traits, and the correlation (r) between the actual and predicted values in the training and validation (in bracket) sets of r = 0.85 (0.76) and r = 0.98 (0.82) with PLS and RF, respectively, for iCheck, and r = 0.99 (0.96) and r = 0.99 (0.96) with PLS and RF, respectively, for Chroma Meter, was obtained. The calibration result of r = 0.93 (0.83) and r = 0.99 (0.81) using PLS and RF, respectively, was obtained for DMC. This effort is valuable in carotenoids improvement and supports the ongoing effort in adopting portable spectrometers for rapid and cheap phenotyping in cassava